Semi-automated Bash workflows for epigenomic analyses: RNA-seq, ChIP-seq, ATAC-seq, etc. Includes job-scheduling scripts for the Torque scheduler.
Hodges Lab Common Code
Common code used for R projects in the Hodges lab. Includes ggplot2 themes that permit specification of PostScript line width and other useful defaults.
If you are interested in the research we are doing, email Dr. Hodges for more information.