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Furuta Y, Pena-Ramos O, Li Z, Chiao L, Zhou Z. Calcium ions trigger the exposure of phosphatidylserine on the surface of necrotic cells. PLoS Genet. 2021 Feb;17(2):e1009066. doi: 10.1371/journal.pgen.1009066. eCollection 2021 Feb. PubMed PMID: 33571185; PubMed Central PMCID: PMC7904182.
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Li W, Yi J, Agbu P, Zhou Z, Kelley RL, Kallgren S, Jia S, He X. Replication stress affects the fidelity of nucleosome-mediated epigenetic inheritance. PLoS Genet. 2017 Jul;13(7):e1006900. doi: 10.1371/journal.pgen.1006900. eCollection 2017 Jul. PubMed PMID: 28749973; PubMed Central PMCID: PMC5549764.
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Li Z, Zhou Z. How are necrotic cells recognized by their predators?. Worm. 2016 Jan-Mar;5(1):e1120400. doi: 10.1080/21624054.2015.1120400. eCollection 2016 Jan-Mar. PubMed PMID: 27073733; PubMed Central PMCID: PMC4805362.
Li Z, Venegas V, Nagaoka Y, Morino E, Raghavan P, Audhya A, Nakanishi Y, Zhou Z. Necrotic Cells Actively Attract Phagocytes through the Collaborative Action of Two Distinct PS-Exposure Mechanisms. PLoS Genet. 2015 Jun;11(6):e1005285. doi: 10.1371/journal.pgen.1005285. eCollection 2015 Jun. PubMed PMID: 26061275; PubMed Central PMCID: PMC4464654.
Shen Q, He B, Lu N, Conradt B, Grant BD, Zhou Z. Phagocytic receptor signaling regulates clathrin and epsin-mediated cytoskeletal remodeling during apoptotic cell engulfment in C. elegans. Development. 2013 Aug;140(15):3230-43. doi: 10.1242/dev.093732. PubMed PMID: 23861060; PubMed Central PMCID: PMC3931732.
Huang S, Jia K, Wang Y, Zhou Z, Levine B. Autophagy genes function in apoptotic cell corpse clearance during C. elegans embryonic development. Autophagy. 2013 Feb 1;9(2):138-49. doi: 10.4161/auto.22352. Epub 2012 Oct 29. PubMed PMID: 23108454; PubMed Central PMCID: PMC3552879.
Li Z, Lu N, He X, Zhou Z. Monitoring the clearance of apoptotic and necrotic cells in the nematode Caenorhabditis elegans. Methods Mol Biol. 2013;1004:183-202. doi: 10.1007/978-1-62703-383-1_14. PubMed PMID: 23733578; PubMed Central PMCID: PMC4038443.
Sun L, Liu O, Desai J, Karbassi F, Sylvain MA, Shi A, Zhou Z, Rocheleau CE, Grant BD. CED-10/Rac1 regulates endocytic recycling through the RAB-5 GAP TBC-2. PLoS Genet. 2012;8(7):e1002785. doi: 10.1371/journal.pgen.1002785. Epub 2012 Jul 12. PubMed PMID: 22807685; PubMed Central PMCID: PMC3395619.
Lu N, Shen Q, Mahoney TR, Neukomm LJ, Wang Y, Zhou Z. Two PI 3-kinases and one PI 3-phosphatase together establish the cyclic waves of phagosomal PtdIns(3)P critical for the degradation of apoptotic cells. PLoS Biol. 2012 Jan;10(1):e1001245. doi: 10.1371/journal.pbio.1001245. Epub 2012 Jan 17. PubMed PMID: 22272187; PubMed Central PMCID: PMC3260314.
Lu N, Zhou Z. Membrane trafficking and phagosome maturation during the clearance of apoptotic cells. Int Rev Cell Mol Biol. 2012;293:269-309. doi: 10.1016/B978-0-12-394304-0.00013-0. Review. PubMed PMID: 22251564; PubMed Central PMCID: PMC3551535.
Lu N, Shen Q, Mahoney TR, Liu X, Zhou Z. Three sorting nexins drive the degradation of apoptotic cells in response to PtdIns(3)P signaling. Mol Biol Cell. 2011 Feb 1;22(3):354-74. doi: 10.1091/mbc.E10-09-0756. PubMed PMID: 21148288; PubMed Central PMCID: PMC3031466.
He B, Yu X, Margolis M, Liu X, Leng X, Etzion Y, Zheng F, Lu N, Quiocho FA, Danino D, Zhou Z. Live-cell imaging in Caenorhabditis elegans reveals the distinct roles of dynamin self-assembly and guanosine triphosphate hydrolysis in the removal of apoptotic cells. Mol Biol Cell. 2010 Feb 15;21(4):610-29. doi: 10.1091/mbc.e09-05-0440. Epub 2009 Dec 16. PubMed PMID: 20016007; PubMed Central PMCID: PMC2820425.
Wu HH, Bellmunt E, Scheib JL, Venegas V, Burkert C, Reichardt LF, Zhou Z, Fariñas I, Carter BD. Glial precursors clear sensory neuron corpses during development via Jedi-1, an engulfment receptor. Nat Neurosci. 2009 Dec;12(12):1534-41. doi: 10.1038/nn.2446. Epub 2009 Nov 15. PubMed PMID: 19915564; PubMed Central PMCID: PMC2834222.
He B, Lu N, Zhou Z. Cellular and nuclear degradation during apoptosis. Curr Opin Cell Biol. 2009 Dec;21(6):900-12. doi: 10.1016/j.ceb.2009.08.008. Epub 2009 Sep 24. Review. PubMed PMID: 19781927; PubMed Central PMCID: PMC2787732.
Lu N, Yu X, He X, Zhou Z. Detecting apoptotic cells and monitoring their clearance in the nematode Caenorhabditis elegans. Methods Mol Biol. 2009;559:357-70. doi: 10.1007/978-1-60327-017-5_25. PubMed PMID: 19609769; PubMed Central PMCID: PMC2901927.
Zhou Z, Yu X. Phagosome maturation during the removal of apoptotic cells: receptors lead the way. Trends Cell Biol. 2008 Oct;18(10):474-85. doi: 10.1016/j.tcb.2008.08.002. Epub 2008 Sep 4. Review. PubMed PMID: 18774293; PubMed Central PMCID: PMC3125982.
Yu X, Lu N, Zhou Z. Phagocytic receptor CED-1 initiates a signaling pathway for degrading engulfed apoptotic cells. PLoS Biol. 2008 Mar 18;6(3):e61. doi: 10.1371/journal.pbio.0060061. PubMed PMID: 18351800; PubMed Central PMCID: PMC2267821.
Mangahas PM, Yu X, Miller KG, Zhou Z. The small GTPase Rab2 functions in the removal of apoptotic cells in Caenorhabditis elegans. J Cell Biol. 2008 Jan 28;180(2):357-73. doi: 10.1083/jcb.200708130. PubMed PMID: 18227280; PubMed Central PMCID: PMC2213587.
Zhou Z. New phosphatidylserine receptors: clearance of apoptotic cells and more. Dev Cell. 2007 Dec;13(6):759-60. doi: 10.1016/j.devcel.2007.11.009. Review. PubMed PMID: 18061557.
Venegas V, Zhou Z. Two alternative mechanisms that regulate the presentation of apoptotic cell engulfment signal in Caenorhabditis elegans. Mol Biol Cell. 2007 Aug;18(8):3180-92. doi: 10.1091/mbc.e07-02-0138. Epub 2007 Jun 13. PubMed PMID: 17567952; PubMed Central PMCID: PMC1949360.
Hamon Y, Trompier D, Ma Z, Venegas V, Pophillat M, Mignotte V, Zhou Z, Chimini G. Cooperation between engulfment receptors: the case of ABCA1 and MEGF10. PLoS One. 2006 Dec 27;1:e120. doi: 10.1371/journal.pone.0000120. PubMed PMID: 17205124; PubMed Central PMCID: PMC1762421.
Yu X, Odera S, Chuang CH, Lu N, Zhou Z. C. elegans Dynamin mediates the signaling of phagocytic receptor CED-1 for the engulfment and degradation of apoptotic cells. Dev Cell. 2006 Jun;10(6):743-57. doi: 10.1016/j.devcel.2006.04.007. PubMed PMID: 16740477.
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Zhou Z, Mangahas PM, Yu X. The genetics of hiding the corpse: engulfment and degradation of apoptotic cells in C. elegans and D. melanogaster. Curr Top Dev Biol. 2004;63:91-143. doi: 10.1016/S0070-2153(04)63004-3. Review. PubMed PMID: 15536015.
Zhou Z, Caron E, Hartwieg E, Hall A, Horvitz HR. The C. elegans PH domain protein CED-12 regulates cytoskeletal reorganization via a Rho/Rac GTPase signaling pathway. Dev Cell. 2001 Oct;1(4):477-89. doi: 10.1016/s1534-5807(01)00058-2. PubMed PMID: 11703939.
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Elledge SJ, Zhou Z, Allen JB, Navas TA, Jones WJ. DNA damage and cell cycle regulation in S. cerevisiae. . In: The Cell Cycle: Regulators, Targets, and Clinical Applications. Hu VW, editor. New York: Plenum Press; 1994. p.163-166.
Zhou Z, Elledge SJ. DUN1 encodes a protein kinase that controls the DNA damage response in yeast. Cell. 1993 Dec 17;75(6):1119-27. doi: 10.1016/0092-8674(93)90321-g. PubMed PMID: 8261511.
Elledge SJ, Zhou Z, Allen JB, Navas TA. DNA damage and cell cycle regulation of ribonucleotide reductase. Bioessays. 1993 May;15(5):333-9. doi: 10.1002/bies.950150507. Review. PubMed PMID: 8343143.
Zhou Z, Elledge SJ. Isolation of crt mutants constitutive for transcription of the DNA damage inducible gene RNR3 in Saccharomyces cerevisiae. Genetics. 1992 Aug;131(4):851-66. PubMed PMID: 1516817; PubMed Central PMCID: PMC1205097.
Elledge SJ, Zhou Z, Allen JB. Ribonucleotide reductase: regulation, regulation, regulation. Trends Biochem Sci. 1992 Mar;17(3):119-23. doi: 10.1016/0968-0004(92)90249-9. Review. PubMed PMID: 1412696.
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