Chromatin Dysregulation in Human Disease
Several years ago, we showed that BAF and PBAF complexes are mutated in ~20% of all cancers, making them one of the most frequently mutated regulatory complexes in malignancy. In our previous work, we uncovered widespread mutational patterns in many different cancers, with high mutation frequencies analogous to other major tumor suppressors such as p53 or Rb1. In certain cancers, these mutations have been shown to drive malignancy. Unfortunately, the role of these complexes in the larger number of more frequent cancers remains mysterious. Moreover, there currently exist no targeted therapies to treat patients whose cancers have these defects.
Several of our studies focus on the BAF/PBAF ATPase subunit SMARCA4 (BRG1). SMARCA4 regulates DNA accessibility at super-enhancers, and opposes the accumulation of Polycomb repressive factors at bivalent chromatin. We use exciting new technologies to reveal how BAF and PBAF subunits work, and to identify new approaches to treat their dysfunction in cancer and other diseases. We apply multi-scale approaches to assess the function of BAF and PBAF complexes from the scale of single molecules to multicellular systems. Our experiments span a variety of disease contexts, including leukemia and several solid tumors.