Elizabeth Atkinson Lab

Atkinson Lab Publications


Recent Select Publications


For a full and up-to-date list of publications, visit Dr. Atkinson's Google scholar page.

Atkinson EG, Artomov M, Karczewski KJ,  Loboda AA, Rehm HL, MacArthur DG, Neale BM, Daly MJ. (2023). Discordant calls across genotype discovery approaches elucidate variants with systematic errors. (Accepted at Genome Research).

Ragsdale, AP, Weaver, TD, Atkinson, EG. et al. (2023). A weakly structured stem for human origins in Africa. Nature. May 17; ePub ahead of print. PMID: 37198480. [Online] [In popular press]

Atkinson, EG. (2023). Estimation of cross-ancestry genetic correlations within ancestry tracts of admixed samples. Nature Genetics. April; 55, 527–529. PMID: 36941440. [Online]

Tan, T & Atkinson, EG. Strategies for the Genomic Analysis of Admixed Populations. Annual Review of Biomedical Data Science. 2023. April 26 (6). PMID: 37127050. [Online]

Atkinson, JG & Atkinson, EG. (2023) Machine Learning and Health Care: Potential Benefits and Issues. J. Ambulatory Care Management. Apr-Jun;46(2):114-120. PMCID: PMC9974552. [Online]

Majara L, Kalungi A, Koen N, Tsuo K, Wang Y, Gupta R, Nkambule LL, Zar H, Stein DJ, Kinyanda E, Atkinson EG, Martin AR. (2023). Low and differential polygenic score generalizability among African populations due largely to genetic diversity. Human Genetics and Genomics Advances. Feb 13;4(2):100184. PMCID: PMC9982687. [Online]

Atkinson, E.G., Bianchi, S. B., Ye, G. Y., Martínez-Magaña, J. J., Tietz, G. E., Montalvo-Ortiz, J. L., Giusti-Rodriguez, P., Palmer, A. A., & Sanchez-Roige, S. (2022). Cross-ancestry genomic research: time to close the gap. Neuropsychopharmacology 2022, 1–2. [Online]

Schizophrenia Working Group of the Psychiatric Genomics Consortium. Mapping genomic loci implicates genes and synaptic biology in schizophrenia. Nature. 604, 502–508 (2022). 

Atkinson EG, Dalvie S, Pichkar Y, Kalungi A, Majara L, Injera WE, et al. (2022) Genetic structure correlates with ethnolinguistic diversity in eastern and southern Africa. American Journal of Human Genetics. Sep 1;109(9):1667-1679. doi: 10.1016/j.ajhg.2022.07.013. [Online] [In the news]

Atkinson EG. Choquet, H., Khor, C. C., & Wonkam, A. (2022). Improving equity in human genomics research. Communications Biology, 5(1). [Online]

Atkinson EG, Maihofer AX, Kanai M, Martin AR, Karczewski KJ, Santoro ML, et al. (2021) Tractor uses local ancestry to enable the inclusion of admixed individuals in GWAS and to boost power. Nature Genetics, 53:195–204. [Online][Press release][In the news]

The COVID-19 Host Genetics Initiative. Mapping the human genetic architecture of COVID-19 by worldwide meta-analysis. (2021) Nature[Online]

Camarena B, Atkinson EG, Baker M, et al. (2021) Neuropsychiatric Genetics of Psychosis in the Mexican Population: A Genome-Wide Association Study Protocol for Schizophrenia, Schizoaffective, and Bipolar Disorder Patients and Controls. Complex Psychiatry. https://www.karger.com/Article/Abstract/518926. [Online]

Gopalan S, Atkinson EG, Buck LT, Weaver TD, Henn BM. (2021) Inferring archaic introgression from hominin genetic data. Evolutionary Anthropology. https://doi.org/10.1002/evan.21895. [Online]

Martin AR, Atkinson EG, Chapman SB, Stevenson A, Stroud RE, et al. (2021) Low-coverage sequencing cost-effectively detects known and novel variation in underrepresented populations. American Journal of Human Genetics, 108:656-668. [Online]

Wendt FR, Pathak GA, Overstreet C, Tylee DS, Gelernter J, Atkinson EG, Polimanti, R. (2021) Characterizing the effect of background selection on the polygenicity of brain-related traits. Genomics, 113:111–119.[Online]

Guindo-Martínez M, Amela R, Bonàs-Guarch S, Puiggròs M, Salvoro C, Miguel-Escalada I, et al. (2021) The impact of non-additive genetic associations on age-related complex diseases. Nature Communications, 12:2436.[Online]

Scelza BA, Atkinson EG, Prall S, McElreath R, Sheehama J, Henn BM. (2020) The ethics and logistics of field-based genetic paternity studies. Evolutionary Human Sciences 2020;2:1–36. [Online]

Scelza BA, Prall SP, Swinford N, Gopalan S, Atkinson EG, McElreath R, et al. (2020) High rate of extrapair paternity in a human population demonstrates diversity in human reproductive strategies. Science Advances 6:eaay6195. [Online]

Nievergelt CM, Maihofer AX, Klengel T, Atkinson EG, et al. (2019). International meta-analysis of PTSD genome-wide association studies identifies sex- and ancestry-specific genetic risk loci. Nature Communications, 10:4558. [Online]

Sugden LA, Atkinson EG, Fischer AP, Rong S, Henn BM, Ramachandran S. Localization of adaptive variants in human genomes using averaged one-dependence estimation. (2018) Nature Communications 9:703. [Online]

Atkinson EG, Audesse AJ, Palacios J, Smith GT, Bobo DM, Webb AE, Ramachandran S, Henn BM (2018). No Evidence for Recent Selection at FOXP2 among Diverse Human Populations. Cell, 174(6): 1424-1435. PMC6128738. [Online][In the news] [In popular press]

Martin, A.R., Lin, M., Granka, J.M., Myrick, J.W., Liu, X., Sockell, A., Atkinson, EG, Werely, C.J., Möller, M., Sandhu, M.S., et al. (2017). An Unexpectedly Complex Architecture for Skin Pigmentation in Africans. Cell 171, 1340–1353.e14. [Online] [In the media] [Related popular press]