Selected Publications


Qi Xie, Tao P. Wu, Ryan C. Gimple, et al., “N6-methyladenine DNA Modification in Glioblastoma”, Cell, 175 (5), 1228-1243.E20, 2018. (*Co-First Author)

Tao P. Wu, Tao Wang, et al., “DNA Methylation on N6-adenine in mammalian embryonic stem cells”, Nature, 532 (7599), 329-333, 2016. (Article)

Tao Wu, Yifei Liu, et al., “Histone Variant H2A.X Deposition Pattern Serves as a Functional Epigenetic Mark for Distinguishing the Developmental Potentials of iPSCs”, Cell Stem Cell,15, 281-294, 2014.

Hana Benchetrit, Shay Herman, Niek van Wietmarschen, Tao Wu, et al., “ Extensive Nuclear Reprogramming Underlies Lineage Conversion into Functional Trophoblast Stem-like Cells”, Cell Stem Cell, 17, 543-556, 2015.

Yosef Buganim, Styliani Markoulaki, Niek van Wietmarschen, Heather Hoke, Tao Wu, et al., “The Developmental Potential of iPSCs Is Greatly Influenced by Reprogramming Factor Selection”, Cell Stem Cell, 15, 295-309, 2014.

Jiameng Dan, Yifei Liu, Na Liu, Maria Chiourea, Maja Okuka, Tao Wu, et al., “Rif1 Maintains Telomere Length Homeostasis of ESCs by Mediating Heterochromatin Silencing”, Developmental Cell, 29, 7-19, 2014.

Tseng Z, Wu T, Liu Y, Zhong M, Xiao A. “Using native chromatin immunoprecipitation to interrogate histone variant protein deposition in embryonic stem cells”, Methods Mol Biol. 1176: 11-22, 2014 (Chapter 2 of the Book “Cancer Genomics and Proteomics”).

Zhang, Bo*; Chen, Beibei*; Wu, Tao*; Tan, Yuliang; et al., “Estimating the Quality of Reprogrammed Cells Using ES Cell Differentiation Expression Patterns”, PLOS ONE, Volume: 6, Issue: 1, Article Number: e15336, 2011. (*Co-First Author)

Bo Zhang, Beibei Chen, Tao Wu, Zhenyu Xuan, et al., “Estimating developmental states of tumors and normal tissues using a linear time-ordered model”, BMC Bioinformatics, 12: 53, 2011.

Tao Wu, Jie Wang, Changning Liu, et al., “NPInter: the noncoding RNAs and protein related biomacromolecules interaction database”, Nucleic Acids Research, 34: D150, 2006.

Baochen Shi*, Xiangqian Guo*, Tao Wu*, et al., “Genome-scale identification of Caenorhabditis elegans regulatory elements by tiling-array mapping of DNase I hypersensitive sites”, BMC Genomics, 10: 92, 2009. (*Co-First Author)

Yuliang Tan, Bo Zhang, Tao Wu, Geir Skogerbo, et al., “Transcriptional inhibition of Hoxd4 expression by miRNA-10a in human breast cancer cells”, BMC Molecular Biology, 10: 12, 2009.

Housheng He, Jie Wang, Tao Liu, Shirley X. Liu, Tiantian Li, Yunfei Wang, Zuwei Qian, Haixia Zheng, Xiaopeng Zhu, Tao Wu, et al., “Mapping the C. elegans noncoding transcriptome with a whole-genome tiling microarray”, Genome Research, 17: 1471, 2007.

Zhihua Zhang, Changning Liu, Geir Skogerbo, Xiaopeng Zhu, Hongchao Lu, Lan Chen, Baochen Shi, Yong Zhang, Jie Wang, Tao Wu and Runsheng Chen, “Dynamic changes in subgraph preference profiles of crucial transcription factors”, PLoS Computational Biology, 2(5): e47, 2006.

Yong Zhang, Shiwei Sun, Tao Wu, Jie Wang, et al., “Identifying Hfq-binding small RNA targets in Escherichia coli”, Biochemical and Biophysical Research Communications, 343: 950, 2006.

Hongchao Lu, Baochen Shi, Gaowei Wu, Yong Zhang, Xiaopeng Zhu, Zhihua Zhang, Changning Liu, Yi Zhao, Tao Wu, Jie Wang and Runsheng Chen, “Integrated analysis of multiple data sources reveals modular structure of biological networks”, Biochemical and Biophysical Research Communications, 345: 302, 2006.