Daoyun Ji Lab

Daoyun Ji Lab Publications


Clarissa Hoffman, Jingheng Cheng, Daoyun Ji and Yuri Dabaghian (2023). Pattern dynamics and stochasticity of the brain rhythms. PNAS, doi.org/10.1073/pnas.2218245120.

Jose A. Fernandez-Leon, Ahmet Kerim Uysal and Daoyun Ji (2022). Place cells dynamically refine grid cell activities to reduce error accumulation during path integration in a continuous attractor model. Scientific Reports, doi.org/10.1038/s41598-022-25863-2.

Xiang Mou, Prakul Suresh and Daoyun Ji (2022). Tetrode recording of rat CA1 place cells in an observational spatial working memory task. STAR Protoc, doi.org/10.1016/j.xpro.2022.101501.

M.S. Zobaer, Carli M. Domenico, Luca Perotti, Daoyun Ji and Yuri Dabaghian (2022). Rapid spectral dynamics in hippocampal oscillons. Frontiers in Computational Neuroscience, doi.org/10.3389/fncom.2022.880742. 

Kwan Tung Li, Xingzhi He, Guangjun Zhou, Jing Yang, Tao Li, Hailan Hu, Daoyun Ji, Changsong Zhou and Huan Ma (2022). Rational designing of oscillatory rhythmicity for memory rescue in plasticity-impaired learning networks. Cell Reports, doi.org/10.1016/j.celrep.2022.110678.

Xiang Mou, Abhishekh Pokhrel, Prakul Suresh, and Daoyun Ji (2021). Observational learning promotes hippocampal remote awake replay toward future reward locations. Neuron, doi.org/10.1016/j.neuron.2021.12.005. 

Preview article in Neuron

Carli Domenico, Daniel Haggerty, Xiang Mou, and Daoyun Ji (2021). LSD degrades hippocampal spatial representations and suppresses hippocampal-visual cortical interactions. Cell Reports, doi.org/10.1016/j.celrep.2021.109714.

News Medical on Sept. 15, 2021

Baylor College of Medicine News on Sept. 14, 2021

Honi Sanders, Daoyun Ji, Takuya Sasaki, Jill K Leutgeb, Mattew A Wilson and John E Lisman (2019). Temporal coding and rate remapping: representation of non-spatial information in the hippocampus. Hippocampus, 2019 Feb;29(2):111-127. doi: 10.1002/hipo.23020. Epub 2018 Nov. 22. PMID: 30129985.

Xiang Mou, Jingheng Cheng, Yan S. W. Yu, Sara E. Kee and Daoyun Ji (2018). Comparing mouse and rat hippocampal place cell activities and firing sequences in the same environments. Frontiers in Cellular Neuroscience, 12:332.

Sara E Kee, Xiang Mou, Huda Y Zoghbi and Daoyun Ji (2018). Impaired spatial memory codes in a mouse model of Rett syndrome. eLife 7: e31451.

Chun-Ting Wu, Daniel Haggerty, Caleb Kemere and Daoyun Ji (2017). Hippocampal awake replay in fear memory retrieval. Nature Neuroscience 20: 571 - 580.

Highlight in Nature Review Neuroscience

ScienceDaily news release on Feb. 20, 2017

Xiang Mou and Daoyun Ji (2016). Social observation enhances cross-environment activation of hippocampal place cell patterns. eLife, e18022. doi: 10.7554/eLife.18022.

Hui Lu, Ryan T. Ash, Lingjie He, Sara E. Kee, Wei Wang, Dinghui Yu, Shuang Hao, XiangLing Meng, Kerstin Ure, Aya Ito-Ishida, Bin Tang, Yaling Sun, Daoyun Ji, Jianrong Tang, Benjamin R. Arenkiel, Stelios M. Smirnakis, Huda Y. Zoghbi (2016). Loss and Gain of MeCP2 Cause Similar Hippocampal Circuit Dysfunction that Is Rescued by Deep Brain Stimulation in a Rett Syndrome Mouse Model. Neuron 91, 739-747.

Zhao R, Grunke SD, Keralapurath MM, Yetman MJ, Lam A, Lee TC, Sousounis K, Jiang Y, Swing DA, Tessarollo L, Ji D*, Jankowsky JL* (2016). Impaired Recall of Positional Memory following Chemogenetic Disruption of Place Field Stability. Cell Reports. doi: 10.1016/j.celrep.2016.06.032. *co-corresponding authors.

Babichev A, Ji D, Mémoli F, Dabaghian YA (2016). A Topological Model of the Hippocampal Cell Assembly Network. Frontiers in Computational Neuroscience. doi: 10.3389/fncom.2016.00050.

Daniel C Haggerty and Daoyun Ji (2015). Activities of visual cortical and hippocampal neurons co-fluctuate in freely moving rats during spatial behavior. eLife 4:08902.

Sarah M Ciupek*, Jingheng Cheng*, Yousuf O Ali, Hui-Chen Lu and Daoyun Ji (2015). Progressive functional impairments of hippocampal neurons in a tauopathy mouse model. Journal of Neuroscience 35: 8118-8131. * co-first author.

Daniel C Haggerty and Daoyun Ji (2014). Initiation of sleep-dependent cortical-hippocampal correlations at wakefulness-sleep transition. Journal of Neurophysiology 112:1763-1774.

Rong Zhao, Stephanie W. Fowler, Angie C. A. Chiang, Daoyun Ji* and Joanna L. Jankowsky* (2014). Impairments in experience-dependent scaling and stability of hippocampal place fields limit spatial learning in a mouse model of Alzheimer's disease. Hippocampus 8: 963-978. *co-corresponding authors.

Jingheng Cheng and Daoyun Ji (2013). Rigid firing sequences undermine spatial memory codes in a neurodegenerative mouse model. eLife 2:e00647

Highlight in Nature Reviews Neuroscience: Sian Lewis (2013). Locating lost memories. Nature Reviews Neuroscience 14:519

Faculty of 1000 recommendations

Daoyun Ji and Matthew A Wilson. (2008). Firing Rate Dynamics in the Hippocampus Induced by Trajectory Learning. Journal of Neuroscience, 28: 4679-4689.

Journal Clubs in Journal of Neuroscience

Daoyun Ji and Matthew A Wilson. (2007). Coordinated Memory Replay in the Visual Cortex and Hippocampus. Nature Neuroscience, 10: 100-107.

Science: News Focus. Greg Miller. (2007). Hunting for Meaning After Midnight. Science, 315: 1360-1363.

Faculty of 1000 Biology

Nature Neuroscience: News and Views. Mayank R Metha, (2007). Cortico-hippocampal interaction during up-down states and memory consolidation. Nature Neuroscience, 10: 13-15.

Nature Review Neuroscience. Claudia Wiedemann. (2007). Sleep and memory: Memory consolidation... while you are sleeping. Nature Reviews Neuroscience, 8: 86-87.

New York Times on Dec. 18, 2006

MIT news on Dec. 18, 2006

New York Times Oct. 23, 2007

Ron S Broide, Ramiro Salas, Daoyun Ji, Richard Paylor, James W Patrick, John A Dani and Mariella De Biasi. (2002). Increased Sensitivity to Nicotine-Induced Seizures in Mice Expressing the L250T Alpha7 Nicotinic Acetylcholine Receptor Mutation. Molecular Pharmacology, 61: 695-705.

John A Dani, Daoyun Ji and Fu-Ming Zhou. (2001). Synaptic Plasticity and Nicotine Addiction. Neuron, 31: 349-352.

Daoyun Ji, Remigijus Lape and John A Dani. (2001). Timing and Location of Nicotinic Activity Enhances or Depresses Hippocampal Synaptic Plasticity. Neuron, 31: 131-141.

Faculty of 1000 Biology

Trends in Neuroscience. Daniel S. McGehee. (2002) Nicotinic Receptors and Synaptic Plasticity... It’s all in the Timing. Trends in Neuroscience, 25: 171-172.

Daoyun Ji and John A Dani. (2000). Inhibition and Disinhibition of Pyramidal Neurons by Activation of Nicotinic Receptors on Hippocampal Interneurons. Journal of Neurophysiology, 83: 2682-2690.

Daoyun Ji, Beilai Hu and Tianlun Chen. (1996). Dynamics of a Neural Network Model with Finite Connectivity and Cycle Stored Patterns. Physica A, 229:147-165.

Daoyun Ji, Beilai Hu and Tianlun Chen. (1996). Dynamics of overlap in pair-correlated Hopfield model. Communication in Theoretical Physics, 25: 293-298.

Daoyun Ji, Beilai Hu and Tianlun Chen. (1995). Storage and retrieval of general pattern sequences. Communication in Theoretical Physics, 23: 495-500.

Daoyun Ji, Beilai Hu and Tianlun Chen. (1995). Parallel dynamics of Hopfield network with self-coupling terms. Communication in Theoretical Physics, 23: 363-370.

Daoyun Ji, Changqi Zhou and Tianlun Chen. (1994). Evolution of overlap in Hopfield network with continuous transfer function. Chinese Physics Letter, 11: 393-396.