Email

chenghang.zong@bcm.edu

Positions

Assistant Professor

Molecular and Human Genetics
Baylor College of Medicine
Houston, Texas United States

McNair Scholar

Baylor College of Medicine
Houston, Texas United States

Member

Dan L Duncan Comprehensive Cancer Center
Baylor College of Medicine
Houston, Texas United States

Education

BA from University of Science and Technology of China

01/2000 - Hefei, Anhui China

Physical Chemistry

PhD from University of California

01/2007 - San Diego, California United States

Chemistry

Post-Doctoral Fellowship at University of Illinois

01/2009 - Urbana-Champaign, Illinois United States

Post-Doctoral Fellowship at Harvard University

01/2013 - Cambridge, Massachusetts United States

Professional Interests

• Single cell analyses, tumorigenesis, genome instability

Professional Statement

The research of our laboratory lies in the interface between novel single cell technologies and quantitative biology. We pursue the development of new quantitative and high-throughput methods for characterizing genomic, epigenetic and transcriptional variations at single cell resolution.

With the rapid development of next-generation sequencing technology, high-throughput sequencing has become a powerful tool for biological research. In our lab, we are interested in examining the genome at single cell resolution, in contrast to the genome averaged from an ensemble of cells. With the development of new single-cell whole genome amplification method, we are able to detect dynamic genomic variations between individual tumor cells. In addition to the genome, we have developed a quantitative single-cell RNA-seq method (MATQ-seq) with ~90% sensitivity. Using MATQ-seq, we successfully detected transcription burst related noise. We have applied MATQ-seq to investigate both heterogeneous tumor cells and the heterogeneous microenvironment, in particular, for pancreatic cancer, small-cell lung cancer, and breast cancer.

We are interested in identifying the early driver mutations of pancreatic ductal adenocarcinoma. To do so, we use both CAS9 mice for in-vivo screening as well as transgenic mice for focused studies of genes of interest. MATQ-seq has been applied to allow us to profile the transcriptome of early precursor lesions.

For translational research, we will actively pursue clinical applications of single cell techniques, including prenatal genetic testing as well as an early cancer diagnosis.

Websites

Selected Publications

• "Effective detection of variation in single-cell transcriptomes using MATQ-seq." Nature Methods. 2017 January ; 14 : 267-270.
• Zong C, Lu S, Chapman AR, Xie XS "Genome-wide detection of single-nucleotide and copy-number variations of a single human cell.." Science. 2012 338 (6114): 1622-6. Pubmed PMID: 23258894
• Lu S, Zong C, Fan W, Yang M, Li J, Chapman AR, Zhu P, Hu X, Xu L, Yan L, Bai F, Qiao J, Tang F, Li R, Xie XS "Probing meiotic recombination and aneuploidy of single sperm cells by whole-genome sequencing.." Science. 2012 338 (6114): 1627-30. Pubmed PMID: 23258895
• Zong C, So LH, Sepúlveda LA, Skinner SO, Golding I "Lysogen stability is determined by the frequency of activity bursts from the fate-determining gene.." Mol. Syst. Biol.. 2010 6 : 440. Pubmed PMID: 21119634

Funding

New Innovator Award

NIH Director's program