HarshaVardhan Doddapaneni, Ph.D.
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HarshaVardhan Doddapaneni, Ph.D.
Associate Professor
Positions
- Associate Professor
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HGSC:Faculty-General/Basic
Baylor College of Medicine
Houston, TX US
Websites
Selected Publications
- Doddapaneni H, Subramanian V, Fu B, Cullen D "A comparative genomic analysis of the oxidative enzymes potentially involved in lignin degradation by Agaricus bisporus.." Fungal Genet. Biol.. 2013 Jun;55:22-31. Pubmed PMID: 23583597
- Lin H, Chen C, Doddapaneni H, Duan Y, Civerolo EL, Bai X, Zhao X "A new diagnostic system for ultra-sensitive and specific detection and quantification of Candidatus Liberibacter asiaticus, the bacterium associated with citrus Huanglongbing.." J. Microbiol. Methods. 2010 Apr;81(1):17-25. Pubmed PMID: 20096734
- Lin H, Doddapaneni H, Bai X, Yao J, Zhao X, Civerolo EL "Acquisition of uncharacterized sequences from Candidatus liberibacter, an unculturable bacterium, using an improved genomic walking method.." Mol. Cell. Probes. 2008 Feb;22(1):30-7. Pubmed PMID: 17689920
- Doddapaneni H, Yao J, Lin H, Walker MA, Civerolo EL "Analysis of the genome-wide variations among multiple strains of the plant pathogenic bacterium Xylella fastidiosa.." BMC Genomics. 2006;7:225. Pubmed PMID: 16948851
- Wilton PR, Sloan DB, Logsdon JM, Doddapaneni H, Neiman M "Characterization of transcriptomes from sexual and asexual lineages of a New Zealand snail (Potamopyrgus antipodarum).." Mol Ecol Resour. 2013 Mar;13(2):289-94. Pubmed PMID: 23280235
- Lin H, Doddapaneni H, Takahashi Y, Walker MA "Comparative analysis of ESTs involved in grape responses to Xylella fastidiosa infection.." BMC Plant Biol.. 2007;7:8. Pubmed PMID: 17316447
- Fernandez-Fueyo E, Ruiz-Dueñas FJ, Ferreira P, Floudas D, Hibbett DS, Canessa P, Larrondo LF, James TY, Seelenfreund D, Lobos S, Polanco R, Tello M, Honda Y, Watanabe T, Watanabe T, San RJ, Kubicek CP, Schmoll M, Gaskell J, Hammel KE, St John FJ, Vanden W "Comparative genomics of Ceriporiopsis subvermispora and Phanerochaete chrysosporium provide insight into selective ligninolysis.." Proc. Natl. Acad. Sci. U.S.A.. 2012 Apr 3;109(14):5458-63. Pubmed PMID: 22434909
- Doddapaneni H, Liao H, Lin H, Bai X, Zhao X, Civerolo EL, Irey M, Coletta-Filho H, Pietersen G "Comparative phylogenomics and multi-gene cluster analyses of the Citrus Huanglongbing (HLB)-associated bacterium Candidatus Liberibacter.." BMC Res Notes. 2008;1:72. Pubmed PMID: 18755041
- Duan Y, Zhou L, Hall DG, Li W, Doddapaneni H, Lin H, Liu L, Vahling CM, Gabriel DW, Williams KP, Dickerman A, Sun Y, Gottwald T "Complete genome sequence of citrus huanglongbing bacterium, 'Candidatus Liberibacter asiaticus' obtained through metagenomics.." Mol. Plant Microbe Interact.. 2009 Aug;22(8):1011-20. Pubmed PMID: 19589076
- Price DC, Chan CX, Yoon HS, Yang EC, Qiu H, Weber AP, Schwacke R, Gross J, Blouin NA, Lane C, Reyes-Prieto A, Durnford DG, Neilson JA, Lang BF, Burger G, Steiner JM, Löffelhardt W, Meuser JE, Posewitz MC, Ball S, Arias MC, Henrissat B, Coutinho PM, Rensin "Cyanophora paradoxa Genome Elucidates Origin of Photosynthesis in Algae and Plants.." Science. 2012 Feb 17;335(6070):843-7. Pubmed PMID: 22344442
- Doddapaneni H, Yadav JS "Differential regulation and xenobiotic induction of tandem P450 monooxygenase genes pc-1 (CYP63A1) and pc-2 (CYP63A2) in the white-rot fungus Phanerochaete chrysosporium.." Appl. Microbiol. Biotechnol.. 2004 Oct;65(5):559-65. Pubmed PMID: 15378295
- Yao J, Huot B, Foune C, Doddapaneni H, Enyedi A "Expression of a beta-glucosidase gene results in increased accumulation of salicylic acid in transgenic Nicotiana tabacum cv. Xanthi-nc NN genotype.." Plant Cell Rep.. 2007 Mar;26(3):291-301. Pubmed PMID: 17082925
- Morin E, Kohler A, Baker AR, Foulongne-Oriol M, Lombard V, Nagy LG, Ohm RA, Patyshakuliyeva A, Brun A, Aerts AL, Bailey AM, Billette C, Coutinho PM, Deakin G, Doddapaneni H, Floudas D, Grimwood J, Hildén K, Kües U, Labutti KM, Lapidus A, Lindquist EA, Luc "Genome sequence of the button mushroom Agaricus bisporus reveals mechanisms governing adaptation to a humic-rich ecological niche.." Proc. Natl. Acad. Sci. U.S.A.. 2012 Oct 23;109(43):17501-6. Pubmed PMID: 23045686
- Syed K, Doddapaneni H, Subramanian V, Lam YW, Yadav JS "Genome-to-function characterization of novel fungal P450 monooxygenases oxidizing polycyclic aromatic hydrocarbons (PAHs).." Biochem. Biophys. Res. Commun.. 2010 Sep 3;399(4):492-7. Pubmed PMID: 20674550
- Doddapaneni H, Lin H, Walker MA, Yao J, Civerolo EL "VitisExpDB: a database resource for grape functional genomics.." BMC Plant Biol.. 2008;8:23. Pubmed PMID: 18307813
- Lin H, Lou B, Glynn JM, Doddapaneni H, Civerolo EL, Chen C, Duan Y, Zhou L, Vahling CM "The complete genome sequence of 'Candidatus Liberibacter solanacearum', the bacterium associated with potato zebra chip disease.." PLoS ONE. 2011;6(4):e19135. Pubmed PMID: 21552483
- Pomerantz MM, Ahmadiyeh N, Jia L, Herman P, Verzi MP, Doddapaneni H, Beckwith CA, Chan JA, Hills A, Davis M, Yao K, Kehoe SM, Lenz HJ, Haiman CA, Yan C, Henderson BE, Frenkel B, Barretina J, Bass A, Tabernero J, Baselga J, Regan MM, Manak JR, Shivdasani R "The 8q24 cancer risk variant rs6983267 shows long-range interaction with MYC in colorectal cancer.." Nat. Genet.. 2009 Aug;41(8):882-4. Pubmed PMID: 19561607
- Yao J, Lin H, Van Deynze A, Doddapaneni H, Francis M, Lemos EG, Civerolo EL "PrimerSNP: a web tool for whole-genome selection of allele-specific and common primers of phylogenetically-related bacterial genomic sequences.." BMC Microbiol.. 2008;8:185. Pubmed PMID: 18937861
- Doddapaneni H, Subramanian V, Yadav JS "Physiological regulation, xenobiotic induction, and heterologous expression of P450 monooxygenase gene pc-3 (CYP63A3), a new member of the CYP63 gene cluster in the white-rot fungus Phanerochaete chrysosporium.." Curr. Microbiol.. 2005 Jun;50(6):292-8. Pubmed PMID: 15968506
- Yadav JS, Doddapaneni H, Subramanian V "P450ome of the white rot fungus Phanerochaete chrysosporium: structure, evolution and regulation of expression of genomic P450 clusters.." Biochem. Soc. Trans.. 2006 Dec;34:1165-9. Pubmed PMID: 17073777
- Subramanian V, Doddapaneni H, Syed K, Yadav JS "P450 redox enzymes in the white rot fungus Phanerochaete chrysosporium: gene transcription, heterologous expression, and activity analysis on the purified proteins.." Curr. Microbiol.. 2010 Oct;61(4):306-14. Pubmed PMID: 20221604
- Danks G, Campsteijn C, Parida M, Butcher S, Doddapaneni H, Fu B, Petrin R, Metpally R, Lenhard B, Wincker P, Chourrout D, Thompson EM, Manak JR "OikoBase: a genomics and developmental transcriptomics resource for the urochordate Oikopleura dioica.." Nucleic Acids Res.. 2013 Jan;41:D845-53. Pubmed PMID: 23185044
- Yao J, Lin H, Doddapaneni H, Civerolo EL "nWayComp: a genome-wide sequence comparison tool for multiple strains/species of phylogenetically related microorganisms.." In Silico Biol. (Gedrukt). 2007;7(2):195-200. Pubmed PMID: 17688445
- Doddapaneni H, Yadav JS "Microarray-based global differential expression profiling of P450 monooxygenases and regulatory proteins for signal transduction pathways in the white rot fungus Phanerochaete chrysosporium.." Mol. Genet. Genomics. 2005 Dec;274(5):454-66. Pubmed PMID: 16231151
- Hong X, Doddapaneni H, Comeron JM, Rodesch MJ, Halvensleben HA, Nien CY, Bolei F, Metpally R, Richmond TA, Albert TJ, Manak JR "Microarray-Based Capture of Novel Expressed Cell Type-Specific Transfrags (CoNECT) to Annotate Tissue-Specific Transcription in Drosophila melanogaster.." G3 (Bethesda). 2012 Aug;2(8):873-82. Pubmed PMID: 22908036
- Loconsole G, Saldarelli P, Doddapaneni H, Savino V, Martelli GP, Saponari M "Identification of a single-stranded DNA virus associated with citrus chlorotic dwarf disease, a new member in the family Geminiviridae.." Virology. 2012 Oct 10;432(1):162-72. Pubmed PMID: 22749878
- Voegel TM, Doddapaneni H, Cheng DW, Lin H, Stenger DC, Kirkpatrick BC, Roper MC "Identification of a response regulator involved in surface attachment, cell-cell aggregation, exopolysaccharide production and virulence in the plant pathogen Xylella fastidiosa.." Mol. Plant Pathol.. 2013 Apr;14(3):256-64. Pubmed PMID: 23186359
- Martinez D, Challacombe J, Morgenstern I, Hibbett D, Schmoll M, Kubicek CP, Ferreira P, Ruiz-Duenas FJ, Martinez AT, Kersten P, Hammel KE, Vanden Wymelenberg A, Gaskell J, Lindquist E, Sabat G, Bondurant SS, Larrondo LF, Canessa P, Vicuna R, Yadav J, Dodd "Genome, transcriptome, and secretome analysis of wood decay fungus Postia placenta supports unique mechanisms of lignocellulose conversion.." Proc. Natl. Acad. Sci. U.S.A.. 2009 Feb 10;106(6):1954-9. Pubmed PMID: 19193860
- Doddapaneni H, Chakraborty R, Yadav JS "Genome-wide structural and evolutionary analysis of the P450 monooxygenase genes (P450ome) in the white rot fungus Phanerochaete chrysosporium: evidence for gene duplications and extensive gene clustering.." BMC Genomics. 2005;6:92. Pubmed PMID: 15955240
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