Metagenomic and Metatranscriptomic Analysis
- Microbial diversity and relative abundances
- Functional diversity
Bacterial Genomes
- Sequencing
- Assembly
- Annotation
- Comparative genomics
Clinical Metadata Analysis
- Connecting clinical variables to shifts in microbiome structure and function
Informatics, Tools, and Software
- Evaluation and implementation of tools and software for large scale sequence analysis projects
- Development of novel analysis and visualization methods
- Data storage and archiving