Seed Grant Awardee Publications


Journal of Magnetic Resonance Imaging
Chiang S, Levin HS, Haneef Z
"Computer-automated Focus Lateralization of Temporal Lobe Epilepsy Using fMRI"
J Magn Reson Imaging. 2015 Jun;41(6):1689-94. doi: 10.1002/jmri.24696. Epub 2014 Jul 9. PMID: 25044773.

Mayle A, Yang L, Rodriguez B, Zhou T, Chang E, Curry CV, Challen GA, Li W, Wheeler D, Rebel VI, Goodell MA
"Dnmt3a Loss Predisposes Murine Hematopoietic Stem Cells to Malignant Transformation"
Blood. 2015 Jan 22;125(4):629-38. PMID: 25416277.

Drug and Alcohol Dependence
Savjani RR, Velasquez KM, Thompson-Lake DG, Baldwin PR, Eagleman DM, De La Garza R, Salas R
"Characterizing White Matter Changes in Cigarette Smokers Via Diffusion Tensor Imaging"
Drug Alcohol Depend. 2014 Dec 1;145:134-42. doi: 10.1016/j.drugalcdep.2014.10.006. Epub 2014 Oct 22. PMID: 25457737.

Epilepsy Research
Chiang S, Stern JM, Engel J Jr, Levin HS, Haneef Z
"Differences in Graph Theory Functional Connectivity in Left and Right Temporal Lobe Epilepsy"
Epilepsy Res. 2014 Dec;108(10):1770-81. doi: 10.1016/j.eplepsyres.2014.09.023. Epub 2014 Sep 28. PMID: 25445238.

Haneef Z, Chiang S
"Clinical Correlates of Graph Theory Findings in Temporal Lobe Epilepsy"
Seizure. 2014 Nov;23(10):809-18. doi: 10.1016/j.seizure.2014.07.004. Epub 2014 Jul 23. PMID: 25127370.

Journal of Visualized Experiments
Haneef Z, Lenartowicz A, Yeh HJ, Engel J Jr, Stern JM
"Network Analysis of the Default Mode Network Using Functional Connectivity MRI in Temporal Lobe Epilepsy"
J Vis Exp. 2014 Aug 5;(90):e51442. doi: 10.3791/51442. PMID: 25146174.

Clinical Neurophysiology
Chiang S, Haneef Z
"Graph Theory Findings in the Pathophysiology of Temporal Lobe Epilepsy"
Clin Neurophysiol. 2014 Jul;125(7):1295-305. doi: 10.1016/j.clinph.2014.04.004. Epub 2014 Apr 21. PMID: 24831083.


Cell Stem Cell
Challen GA, Sun D, Mayle A, Jeong M, Luo M, Rodriguez B, Mallaney C, Celik H, Yang L, Xia Z, Cullen S, Berg J, Zheng Y, Darlington GJ, Li W, Goodell MA
"Dnmt3a and Dnmt3b have Overlapping and Distinct Functions in Hematopoietic Stem Cells"
Cell Stem Cell. 2014 Sep 4;15(3):350-64. doi: 10.1016/j.stem.2014.06.018. Epub 2014 Aug 14. PMID: 25130491.

Genome Biology
Sun D, Xi Y, Rodriguez B, Park HJ, Tong P, Meong M, Goodell MA, Li W
"MOABS: Model Based Analysis of Bisulfite Sequencing Data"
Genome Biol. 2014 Feb 24;15(2):R38. doi: 10.1186/gb-2014-15-2-r38. PMID: 24565500.

Yu P, Shaw CA
"An Efficient Algorithm for Accurate Computation of the Dirichlet-multinomial Log-likelihood Function"
Bioinformatics. 2014 Jun 1;30(11):1547-54. doi: 10.1093/bioinformatics/btu079. Epub 2014 Feb 11. PMID: 24519380.

The Journal of Neuroscience
Tomson SN, Narayan M, Allen GI, Eagleman DM
"Neural Networks of Colored Sequence Synesthesia"
J Neurosci. 2013 Aug 28;33(35):14098-106. doi: 10.1523/JNEUROSCI.5131-12.2013. PMID: 23986245.


FY12 Awardees


American Journal of Obstetrics and Gynecology
Ma J, Purcell H, Showalter L, Aagaard KM
"Mitochondrial DNA Sequence Variation is Largely Conserved at Birth with Rare de novo Mutations in Neonates"
Am J Obstet Gynecol. 2015 Apr;212(4):530.e1-8. doi: 10.1016/j.ajog.2015.02.009. Epub 2015 Feb 14. PMID: 25687567.

BMC Genomics
Ma J, Coarfa C, Qin X, Bonnen PE, Milosavljevic A, Versalovic J, Aagaard K
"mtDNA Haplogroup and Single Nucleotide Polymorphisms Structure Human Microbiome Communities"
BMC Genomics. 2014 Apr 3;15:257. doi: 10.1186/1471-2164-15-257. PMID: 24694284.

Figard L, Sokac AM
"A Membrane Reservoir at the Cell Surface: Unfolding the Plasma Membrane to Fuel Cell Shape Change"
Bioarchitecture. 2014 Mar-Apr;4(2):39-46. doi: 10.4161/bioa.29069. Epub 2014 May 20. PMID: 24844289.

Developmental Cell
Figard L, Xu H, Garcia HG, Golding I, Sokac AM
"The Plasma Membrane Flattens Out to Fuel Cell-surface Growth During Drosophila Cellularization"
Dev Cell. 2013 Dec 23;27(6):648-55. doi: 10.1016/j.devcel.2013.11.006. Epub 2013 Dec 5. PMID: 24316147.

PLoS Genetics
Zheng L, Sepúlveda LA, Lua RC, Lichtarge O, Golding I, Sokac AM
"The Maternal-to-Zygotic Transition Targets Actin to Promote Robustness During Morphogenesis"
PLoS Genet. 2013 Nov;9(11):e1003901. doi: 10.1371/journal.pgen.1003901. Epub 2013 Nov 7. PMID: 24244181.

Institute of Electrical and Electronics Engineers Trans Nanobioscience
Allen GI, Liu Z
"A Local Poisson Graphical Model for Inferring Networks from Sequencing Data"
IEEE Trans Nanobioscience. 2013 Sep;12(3):189-98. doi: 10.1109/TNB.2013.2263838. Epub 2013 Aug 15. PMID: 23955777.

2012 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)
Allen GI, Liu Z
"A Log-Linear Graphical Model for Inferring Genetic Networks from High-throughput Sequencing Data"
IEEE. 4-7 Oct. 2012; Philadelphia, PA. E-ISBM: 978-1-4673-2558-5. Print ISBM: 978-1-4673-2559-2.