hapQTL: haplotype Quantitative Loci
This software performs association testing between local haplotypes and phenotypes at each core marker. It doesn't require phasing or an arbitrary window to specify haplotypes. It is the companion software for the paper Xu and Guan (2014).
BIMBAM: Bayesian Imputation Based Association Mapping
The software performs genotype imputation and statistical tests for disease association, including single SNP tests and regional multi-SNP tests
WinSSS: Windows-based Stochastic Spatial Simulator
This is a Windows-based software. It implements many classical models in interacting particle systems, for example, the multiple contact process, the Greenberg Hastings process, and the generalized Rock-Scissor-Paper dynamic. The real time animations are rendered by OpenGL.