ACM (Association for Computing Machinery)
Meena Nagarajan, Angela D. Wilkins, Benjamin J. Bachman, Ilya B. Novikov, Sheng Hua Bao, Peter J. Haas, María E. Terrón-Díaz, Sumit Bhatia, Anbu K. Adikesavan, Jacques J. Labrie, Sam Regenbogen, Christie M. Buchovecky, Curtis R. Pickering, Linda Kato, Andreas Martin Lisewski, Ana Lelescu, Houyin Zhang, Stephen Boyer, Griff Weber, Ying Chen, Lawrence Donehower, Scott Spangler, Olivier Lichtarge.
"Predicting Future Scientific Discoveries Based on a Networked Analysis of the Past Literature"
ACM. 2015. doi: 10.1145/2783258.2788609
[Abstract]

Nature
Roadmap Epigenomics Consortium, Kundaje A, Meuleman W, Ernst J, Bilenky M, Yen A, Heravi-Moussavi A, Kheradpour P, Zhang Z, Wang J, Ziller MJ, Amin V, Whitaker JW, Schultz MD, Ward LD, Sarkar A, Quon G, Sandstrom RS, Eaton ML, Wu YC, Pfenning AR, Wang X, Claussnitzer M, Liu Y, Coarfa C, Harris RA, Shoresh N, Epstein CB, Gjoneska E, Leung D, Xie W, Hawkins RD, Lister R, Hong C, Gascard P, Mungall AJ, Moore R, Chuah E, Tam A, Canfield TK, Hansen RS, Kaul R, Sabo PJ, Bansal MS, Carles A, Dixon JR, Farh KH, Feizi S, Karlic R, Kim AR, Kulkarni A, Li D, Lowdon R, Elliott G, Mercer TR, Neph SJ, Onuchic V, Polak P, Rajagopal N, Ray P, Sallari RC, Siebenthall KT, Sinnott-Armstrong NA, Stevens M, Thurman RE, Wu J, Zhang B, Zhou X, Beaudet AE, Boyer LA, De Jager PL, Farnham PJ, Fisher SJ, Haussler D, Jones SJ, Li W, Marra MA, McManus MT, Sunyaev S, Thomson JA, Tlsty TD, Tsai LH, Wang W, Waterland RA, Zhang MQ, Chadwick LH, Bernstein BE, Costello JF, Ecker JR, Hirst M, Meissner A, Milosavljevic A, Ren B, Stamatoyannopoulos JA, Wang T, Kellis M.
"Integrative Analysis of 111 Reference Human Epigenomes"
Nature. 2015 Feb 19;518(7539):317-30. DOI: 10.1038/nature14248.  PMID: 25693563
[Abstract]

Nature Communications
Amin V, Harris RA, Onuchic V, Jackson AR, Charnecki T, Paithankar S, Lakshmi Subramanian S, Riehle K, Coarfa C, Milosavljevic A
"Epigenomic Footprints Across 111 Reference Epigenomes Reveal Tissue-specific Epigenetic Regulation of lincRNAs"
Nat Commun. 2015 Feb 18;6:6370. DOI: 10.1038/ncomms7370.  PMID: 25691256
[Abstract]

ACM (Association for Computing Machinery)
Scott Spangler, Angela D. Wilkins, Benjamin J. Bachman, Meena Nagarajan, Tajhal Dayaram, Peter Haas, Sam Regenbogen, Curtis R. Pickering, Austin Comer, Jeffrey N. Myers, Ioana Stanoi, Linda Kato, Ana Lelescu, Jacques J. Labrie, Neha Parikh, Andreas Martin Lisewski, Lawrence Donehower, Ying Chen, Olivier Lichtarge
"Automated Hypothesis Generation Based on Mining Scientific Literature"
ACM. 2014. doi: 10.1145/2623330.2623667
[Abstract]

Genome Research
Katsonis P, Lichtarge O.
"A formal perturbation equation between genotype and phenotype determines the evolutionary action of protein coding variations on fitness."
Genome Res. Epub. 2014 Sep 12. pii: gr.176214.114. PMID: 25217195
[Abstract]

Cell
Lisewski AM, Quiros JP, Ng CL, Adikesavan AK, Miura K, Putluri N, Eastman RT, Scanfeld D, Regenbogen SJ, Altenhofen L, Llinás M, Sreekumar A, Long C , Fidock DA and Lichtarge O.
"Supergenomic Network Compression and the Discovery of EXP1 as a Glutathione Transferase Inhibited by Artesunate." 
Cell. (2014). Volume 158, Issue 4, Pages 916-928. DOI: 10.1016/j.cell.2014.07.011.
[Abstract]