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Breast Center - Biostat Core

Houston, Texas

A BCM research lab.
Biostat Core - Lester and Sue Smith Breast Center
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Microarray Information

Microarray Analysis and Annotation Software
Public Microarray Data Sites

Links to microarray analysis and annotation software*

Software

Link

Free or Commercial

Comment
GCOS

http://www.affymetrix.com

Commercial

PathwayAssist

http://www.ariadnegenomics.com/products/pathway.html

Commercial

††

dChip

http://www.dchip.org

Free

†††

BRB Array Tools

http://linus.nci.nih.gov/BRB-ArrayTools.html

Free

GoMiner

http://discover.nci.nih.gov/gominer/

Free

GenMapp

http://www.genmapp.org/

Free

* Contact Anna Tsimelzon for information on who uses these packages or for access to commercial packages

Licenses are available and restricted for use by Informatics personnel. Contact Anna Tsimelzon for information about the package.

†† Access is available through Timbuktu. Contact Brad Nugent .

††† Up-to-date copy of the program and associated information files are maintained on Microarray Share, contact Anna Tsimelzon for basic instructions and how to use it.

Public Microarray Data Sites

Database

Link

Gene Expression Omnibus

http://www.ncbi.nlm.nih.gov/geo/

ArrayExpress

http://www.ebi.ac.uk/arrayexpress/

Website for microarray data

http://image.thelancet.com/extras/04art5032webtable.pdf

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