skip to content »

Molecular Virology & Microbiology - Alkek Center for Metagenomics and Microbiome Research

Houston, Texas

A BCM research lab.
Department of Molecular Virology and Microbiology
not shown on screen

Publications

Durfee T, Nelson R, Baldwin S, Plunkett G 3rd, Burland V, Mau B, Petrosino JF, Qin X, Muzny DM, Ayele M, Gibbs RA, Csörgo B, Pósfai G, Weinstock GM, Blattner FR. (2008) The complete genome sequence of Escherichia coli DH10B: insights into the biology of a laboratory workhorse. J Bacteriol. 190(7):2597-606.

Matejková P, Strouhal M, Smajs D, Norris SJ, Palzkill T, Petrosino JF, Sodergren E, Norton JE, Singh J, Richmond TA, Molla MN, Albert TJ, Weinstock GM. (2008) Complete genome sequence of Treponema pallidum ssp. Pallidum strain ss14 determined with oligonucleotide arrays. BMC Microbiol. 15;8:76.

Chain, P.S.G., D.V. Grafahm, R. S. Fulton, M.G. FitzGerald, J. Hostetler, D. Muzny, J.C. Detter, J. Ali, B. Birren, T.S. Brettin, D.C. Bruce, C. Buhay, J.R. Cole, Y. Ding, D. Field, G.M. Garrity, R.A. Gibbs, T. Graves, C.S. Han, S.H. Harrison, S. Highlander, M. Holder, P. Hugenholtz, H.M. Khouri, N.C. Kyrpides, D. Lang, A. Lapidus, S.A.Malfatt, K.E. Nelson, J. Parkhill, J. Petrosino, S. Pitluck, X. Qin, T.D. Read, J. Schmutz, S. Sozhamannan, R. Strausberg, G. Sutton, N.R. Thomson, J.M. Tiedje, G. Weinstock, A. Wollam and the entire GSC and HMP Jumpstart consortia (2009) Genome project standards in a new era of sequencing. Science. 326:236-237.

Petrosino, J.F., Galhardo, R.S., Morales, L.D., Rosenberg, S.M. (2009) Stress-induced beta-lactam antibiotic-resistance mutation and the sequences of stationary-phase mutations in the Escherichia coli chromosome. J. Bacteriol. 91:5881-9. PMC2747895

Petrosino, J.F., Highlander, S.K., Luna, R.A., Gibbs, R.A., and Versalovic, J. (2009) Metagenomic Pyrosequencing and Microbial Identification. Clin. Chem. 55:856-66. PMCID: PMC2892905

The NIH Human Microbiome Project Jumpstart Consortium. (2010) A catalog of reference genomes from the Human Microbiome. Science. 328:994-9. PMCID: PMC2940224

Haas, B.J.,, Gevers, D., Earl, A.E., Feldgarden, M., Ward, D.V., Giannoukos, G., Ciulla, Tabbaa, D., Highlander, S.K., Sodergren, E., Methe, B., DeSantis, T.Z., The Human Microbiome Consortium, Petrosino, J.F., Knight, R., and Birren, B.W. (2011) Chimeric 16S rDNA Formation and Detection in Sanger and 454-Pyrosequenced PCR Amplicons. Gen Res. 21:494-504. PMCID: PMC3044863

Saulnier, D.M., Riehle, K., Mistretta, T.A., Diaz, M.A., Mandal, D., Raza, S., Weidler, E.M., Qin, X., Coarfa, C., Milosavljevic, A., Petrosino, J.F., Highlander, S., Gibbs, R., Lynch, S.V., Shulman, R.J., Versalovic, J. (2011) Gastrointestinal Microbiome Signatures Of Pediatric Patients With Irritable Bowel Syndrome. Gastroenterology. 141(5):1782-9 PMCID: PMC Journal in Process

Zhao, J., Li J., Schloss, P.D., Kalikin, L.M., Raymond, T.A., Petrosino, J.F., Young, V.B., Lipuma, J.J. Effect of sample storage conditions on culture-independent bacterial community measures in cystic fibrosis sputum specimens. J Clin Microbiol. 2011 49(10):3717-8 PMCID: PMC Journal in Process

Sczesnak, A., Segata, N., Qin, X., Gevers, D., Petrosino, J.F., Huttenhower, C., Littman, D.R., Ivanov, I.I. (2011) The genome of th17 cell-inducing segmented filamentous bacteria reveals extensive auxotrophy and adaptations to the intestinal environment. Cell Host Microbe.10:260-72. PMCID: PMC Journal in Process

Yilmaz, P., et al, Petrosino, J.F., et al (over 60 authors) and Glöckner F.O. (2011) Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications. Nat Biotechnol. 29:415-420. PMCID: PMC Journal in Process

Zhao, J., Li J., Schloss, P.D., Kalikin, L.M., Raymond, T.A., Petrosino, J.F., Young, V.B., Lipuma, J.J. (2011) Effect of sample storage conditions on culture-independent bacterial community measures in cystic fibrosis sputum specimens. J. Clin. Microbiol. 49:3717-8 PMCID: PMC Journal in Process

Preidis, G.A., Saulnier, D.M., Blutt, S.E., Mistretta, T.A., Riehle, K.P., Major, A.M., Venable, S.F., Finegold, M.J., Petrosino, J.F., Conner, M.E., Versalovic, J. (2012) Probiotics stimulate enterocyte migration and microbial diversity in the neonatal mouse intestine. FASEB J. [Epub ahead of print]

Preidis, G.A., Saulnier, D.M., Blutt, S.E., Mistretta, T.A., Riehle, K.P., Major, A.M., Venable, S.F., Barrish, J.P., Finegold, M.J., Petrosino J.F., Guerrant R.L., Conner M.E., Versalovic J. (2012) Host response to probiotics determined by nutritional status of rotavirus-infected neonatal mice. J Pediatr Gastroenterol Nutr.

Zhao, J., Carmody, L.A., Kalikin, L.M., Li, J., Petrosino, J.F., Schloss, P.D., Young, V.B., Lipuma, J.J. (2012) Impact of enhanced Staphylococcus DNA extraction on microbial community measures in cystic fibrosis sputum. PLoS One. 7:e33127.

Zhao, J., Schloss, P.D., Kalikin, L.M. Carmody, L.A., Foster, B.K., Petrosino, J.F., Cavalcoli, J.D., VanDevanter, D.R., Murray, S., Li, J.Z., Young, V.B., LiPuma, J.J. (2012) Decade-long bacterial community dynamics in cystic fibrosis airways. PNAS (published ahead of print).

Preidis GA, Saulnier DM, Blutt SE, Mistretta TA, Riehle KP, Major AM, Venable SF, Finegold MJ, Petrosino JF, Conner ME, Versalovic J. Probiotics stimulate enterocyte migration and microbial diversity in the neonatal mouse intestine. FASEB J 2012;26(5):1960-9.

Aagaard K, Riehle K, Ma J, Segata N, Mistretta TA, Coarfa C, Raza S, Rosenbaum S, Van den Veyver I, Milosavljevic A, Gevers D, Huttenhower C, Petrosino J, Versalovic J. (2012). A metagenomic approach to characterization of the vaginal microbiome signature in pregnancy. PLoS One. 2012;7(6):e36466. Epub 2012 Jun 13. PMID: 22719832

Human Microbiome Project Consortium. (2012). A framework for human microbiome research. Nature. Jun 13;486(7402):215-21

Human Microbiome Project Consortium. (2012). Structure, function and diversity of the healthy human microbiome. Nature. Jun 13;486(7402):207-14.

Qin X, Galloway-Peña JR, Sillanpaa J, Roh JH, Nallapareddy SR, Chowdhury S, Bourgogne A, Choudhury T, Muzny DM, Buhay CJ, Ding Y, Dugan-Rocha S, Liu W, Kovar C, Sodergren E, Highlander S, Petrosino JF, Worley KC, Gibbs RA, Weinstock GM, Murray BE. (2012). Complete genome sequence of Enterococcus faecium strain TX16 and comparative genomic analysis of Enterococcus faecium genomes. BMC Microbiol. 2012 Jul 7;12:135.

Gevers D, Knight R, Petrosino JF, Huang K, McGuire AL, Birren BW, Nelson KE, White O, Methé BA, Huttenhower C. (2012) The human microbiome project: a community resource for the healthy human microbiome. PLoS Bio. Aug;10(8):e1001377.

McWilliams BD, Palzkill T, Weinstock GM, Petrosino JF. (2012). Identification of novel and cross-species seroreactive proteins from Bacillus anthracis using a ligation-independent cloning-based, SOS-inducible expression system. Microb Pathog. Nov;53_5-6):250-8. Epub 2012 Sep 10. PMID: 22975444

Nagy-Szakal D, Mir SA, Ross MC, Tatevian N, Petrosino JF, Kellermayer R. (2012). Monotonous Diets Protect Against Acute Colitis in Mice: Epidemiologic and Therapeutic Implication. J Pediatr Gastroenterol Nutr. (published ahead of print) PMID: 23085891