Division of Biostatistics
(Susan G. Hilsenbeck, Ph.D., Director)
Mission Statement
We provide statistical consultation and expertise for cancer-related research support including:
- Study design and conduct for preclinical, clinical and epidemiological studies;
- Recommendations for data management and computer systems support;
- Data analysis and interpretation;
- Assistance with manuscript writing;
- Development of new biostatistical methodology to meet the project goals.
We offer state-of-the-art statistical and bioinformatic services. We are committed to meet the quantitative needs of both clinical and basic cancer research for the members of the Dan L. Duncan Cancer Center and other cancer researchers in Baylor College of Medicine (BCM).
Biostatistics services
The Division of Biostatistics also serves as the Biostatistics Shared Resource (BSR) at the Dan L. Duncan Cancer Center under the direction of Dr. Susan G. Hilsenbeck. The BSR is a relatively new Resource, but takes advantage of existing expertise in the Breast and Prostate Programs within BCM and collaborating institutions.
The BSR provides a full range of services, including general biostatistical support for planning, conduct, and analysis of cancer-related clinical, preclinical, laboratory and epidemiologic studies. We also offer study design and analysis of microarray gene expression experiments. We can assist with clinical trial conduct, databases planning, statistical analysis, and report generation for interim analyses, DSMCs, and manuscript preparation. We will review proposals for cancer-related clinical studies and have members on each of the PRMS Working Groups and the PRMS Executive Committee.
General consultation
- Planning, conduct and analysis of all types of studies including laboratory, clinical and epidemiological studies
- Rigorous statistical validation, analysis plan and sample size calculation
- Assistance with study conduct including randomization and data auditing
- Data management recommendation
- Protocol review
Clinical trials
- Quality controls
- Software
Bioinformatics: microarray and proteomics
- Data analysis and study design
- Software
- Public data
Data management (consultation)
- Data definitions
- Forms design
- Database development
- Editing and quality control
- Reporting
Personnel
| Name | Position | Expertise | |
|---|---|---|---|
| Susan Hilsenbeck, Ph.D. | Professor and Director | Prognostic/predictive factors; early phase clinical trials; genomic analysis | sgh@bcm.edu |
| Chad Creighton, Ph.D. | Asst. Professor | Bioinformatics, genomic analysis | creighto@bcm.edu |
| Wei Li, Ph.D. | Asst. Professor | wl1@bcm.edu | |
| Hao Liu, Ph.D. | Asst. Professor | Survival analysis and longitudinal data | haol@bcm.edu |
| Michael Scheurer, Ph.D., M.P.H. | Asst. Professor | scheurer@bcm.edu | |
| Anna Tsimelzon, Ph.D. | Asst. Professor | Microarray analysis | annat@bcm.edu |
| Anna Frolov, M.S. | Instructor | Prostate cancer, prognostic factors | afrolov@bcm.edu |
| Krystal Sexton, M.S. | Research Assoc. | Clinical trials monitoring and reporting | ksexton@bcm.edu |
| Dror Berel, M.S. | Biostatistician | berel@bcm.edu | |
| Priya Bhatia Shetty, M.S. | Biostatistician | Design and analysis of retrospective databases | pbhatia@bcm.edu |
| Tao Wang, M.S. | Biostatistician | Analysis of clinical trials | taow@bcm.tmc.edu |
| Meng-Fen Wu, M.S. | Biostatistician | Early clinical trials; general statistical analysis | mengfenw@bcm.edu |
| Yiqun Zhang, M.S. | Biostatistician | yiqunz@bcm.edu |
Existing biostatistical faculty within Dan L. Duncan Cancer Center-affiliated institutions are invited to affiliate with the Cancer Center Division of Biostatistics. The division invites faculty that can provide important additional expertise in specialty areas such as statistical genetics, health economic analysis or clinical trials.
Education
We have a strong commitment to education. We offer shared Resource members guest lecture in a number of courses within BCM, and often give continuing education talks to post-docs, fellows, and staff members. Dr. Hilsenbeck and Dr. Liu are Co-Course Directors of an introductory course that is open to any BCM student, staff or faculty member. This course is required for Translational Biology and Molecular Medicine Ph.D. students and is also one of several key interventions in the College's Quality Enhancement Plan for education.
Seminar
Cancer center biostatistics seminar
We have biostatistics seminar every month.
Links to seminar
UT SPH Biostatistics
Rice Statistics Department
UT M.D. Anderson, Department of Biostatistics and Applied Mathematics
HACASA Seminar
Public Software/Data
Links to Microarray Analysis and Annotation Software:
Free
dChip
BRB Array Tools
David Database
GoMiner
GenMapp
WebArray
GeneCluster
Commercial
Affymetrix
Array Analyzer
PathwayAssist
GeneSpring
GeneSifter
Ingenuity Pathways Analysis application
Links to Public Microarray Data
Gene Expression Omnibus
dChip -> Public CEL files
ArrayExpress
ONCOMINE
See also the Lancet table for websites of microarray data.
Links to Software for Sample Size Calculation/Study Design for Clinical Trials
- Applets and lectures on design of phase I and II clinical trials, developed by Univ. of Pittsburgh Cancer Institute Biostatistics Facility.
- Program to implement Continual Reassessment Method for dose-finding in phase I trials, developed by Department of Biostatistics, MD Anderson Cancer Center.
- Programs for blocked randomization, power and sample size for clinical trials, CRM for phase I trials, and optimal design for phase II trials, developed by Division of Biostatistics at Johns Hopkins.
- Sample size and power calculations for binary, continuous, and time to event outcomes in a two-group comparative setting, developed by Dr. David Schoenfeld at Massachusetts General Hospital GCRC.
- Java applets for power and sample size calculation, which includes programs for various statistical methods (one and two group comparisons, linear regression, ANOVA) developed by Russ Lenth from Univ of Iowa.
- Splus program for Accelerated Titration Designs for phase I trials, developed by Biometric Research Branch, NCI.
- Program for dose-finding and safety monitoring based on efficacy and adverse outcomes in phase I/II clinical trials, developed by Department of Biostatistics, MD Anderson Cancer Center.
BCM SharePoint
BCM Biostatistics SharePoint Site (requires password).
Contact
We are located on the 3rd and 4th floors of the Cullen building.
One Baylor Plaza
BCM600 (Room 333A)
Houston , TX 77030
Tel: 713-798-1632
Fax: 713-798-1642
E-mail: ccbiostat@breastcenter.tmc.edu